Target Information
Target General Information | Top | |||||
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Target ID |
T79591
(Former ID: TTDS00381)
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Target Name |
Thyroid hormone receptor alpha (THRA)
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Synonyms |
V-erbA-related protein 7; THRA2; THRA1; Nuclear receptor subfamily 1 group A member 1; NR1A1; ERBA1; EAR7; EAR-7; C-erbA-alpha; C-erbA-1
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Gene Name |
THRA
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Target Type |
Successful target
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[1] | ||||
Disease | [+] 2 Target-related Diseases | + | ||||
1 | Hyper-lipoproteinaemia [ICD-11: 5C80] | |||||
2 | Hypo-thyroidism [ICD-11: 5A00] | |||||
Function |
High affinity receptor for thyroid hormones, including triiodothyronine and thyroxine. Isoform Alpha-1: Nuclear hormone receptor that can act as a repressor or activator of transcription.
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BioChemical Class |
Nuclear hormone receptor
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UniProt ID | ||||||
Sequence |
MEQKPSKVECGSDPEENSARSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKA
TGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGM AMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNA QGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFS ELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNI PHFWPKLLMKEREVQSSILYKGAAAEGRPGGSLGVHPEGQQLLGMHVVQGPQVRQLEQQL GEAGSLQGPVLQHQSPKSPQQRLLELLHRSGILHARAVCGEDDSSEADSPSSSEEEPEVC EDLAGNAASP Click to Show/Hide
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3D Structure | Click to Show 3D Structure of This Target | AlphaFold |
Drugs and Modes of Action | Top | |||||
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Approved Drug(s) | [+] 3 Approved Drugs | + | ||||
1 | Dextrothyroxine Sodium | Drug Info | Approved | High blood cholesterol level | [2] | |
2 | Levothyroxine | Drug Info | Approved | Hypothyroidism | [3], [4] | |
3 | Liothyronine | Drug Info | Approved | Hypothyroidism | [2] | |
Clinical Trial Drug(s) | [+] 2 Clinical Trial Drugs | + | ||||
1 | BCT303 | Drug Info | Phase 2 | Hypothyroidism | [5] | |
2 | tiratricol | Drug Info | Clinical trial | Wound healing | [6] | |
Mode of Action | [+] 4 Modes of Action | + | ||||
Modulator | [+] 2 Modulator drugs | + | ||||
1 | Dextrothyroxine Sodium | Drug Info | [7] | |||
2 | BCT303 | Drug Info | [10] | |||
Antagonist | [+] 2 Antagonist drugs | + | ||||
1 | Levothyroxine | Drug Info | [8], [9] | |||
2 | Liothyronine | Drug Info | [1], [9] | |||
Agonist | [+] 2 Agonist drugs | + | ||||
1 | tiratricol | Drug Info | [11] | |||
2 | rT3 | Drug Info | [11] | |||
Inhibitor | [+] 12 Inhibitor drugs | + | ||||
1 | (3,5-Dibromo-4-hexyloxy-phenyl)-acetic acid | Drug Info | [12] | |||
2 | (E)-1-(4-heptylphenyl)but-2-en-1-one | Drug Info | [13] | |||
3 | (Z)-4-(4-hexylphenylamino)-4-oxobut-2-enoic acid | Drug Info | [13] | |||
4 | 1-(4-hexylphenyl)-3-morpholinopropan-1-one | Drug Info | [13] | |||
5 | 3-(3,5-Dibromo-4-hexyloxy-phenyl)-propionic acid | Drug Info | [12] | |||
6 | 3-(4-(benzyloxy)-3,5-dibromophenyl)propanoic acid | Drug Info | [14] | |||
7 | 3-(dibutylamino)-1-(4-hexylphenyl)propan-1-one | Drug Info | [13] | |||
8 | 3-(dimethylamino)-1-(4-hexylphenyl)propan-1-one | Drug Info | [13] | |||
9 | 3-bromo-1-(4-hexylphenyl)propan-1-one | Drug Info | [13] | |||
10 | 4-(4-hexylphenyl)-4-oxobut-2-enoic acid | Drug Info | [13] | |||
11 | 4-hexylphenyl propiolate | Drug Info | [13] | |||
12 | Detrothyronine | Drug Info | [15] |
Cell-based Target Expression Variations | Top | |||||
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Cell-based Target Expression Variations |
Drug Binding Sites of Target | Top | |||||
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Ligand Name: Liothyronine | Ligand Info | |||||
Structure Description | Crystal Structure of human TR alpha bound T3 in orthorhombic space group | PDB:2H79 | ||||
Method | X-ray diffraction | Resolution | 1.87 Å | Mutation | Yes | [16] |
PDB Sequence |
ARGSHMEEMI
151 RSLQQRPEPT161 PEEWDLIHIA171 TEAHRSTNAQ181 GSHWKQRRKF191 LPDDIGQSPI 201 VSMPDGDKVD211 LEAFSEFTKI221 ITPAITRVVD231 FAKKLPMFSE241 LPEDQIILLK 252 GCCMEIMSLR262 AAVRYDPESD272 TLTLSGEMAV282 KREQLKNGGL292 GVVSDAIFEL 302 GKSLSAFNLD312 DTEVALLQAV322 LLMSTDRSGL332 LVDKIEKSQE343 AYLLAFEHYV 353 NHRKHNIPHF363 WPKLLMKVTD373 LRMIGAHASR384 FLHKVEPTEL396 FPPLFLEVFE 406 DQ
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ASN179
4.833
PHE215
4.001
PHE218
3.054
THR219
4.886
ILE221
3.953
ILE222
3.570
ALA225
3.625
ARG228
3.051
MET256
3.735
MET259
3.457
SER260
4.224
ARG262
3.501
ALA263
3.720
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Levothyroxine | Ligand Info | |||||
Structure Description | Crystal structure of TR-alpha bound to T4 in a second site | PDB:4LNX | ||||
Method | X-ray diffraction | Resolution | 2.05 Å | Mutation | No | [17] |
PDB Sequence |
SHMEEMIRSL
154 QQRPEPTPEE164 WDLIHIATEA174 HRSTNAQGSH184 WKQRRKFLPD194 DIGQSPIVSM 204 PDGDKVDLEA214 FSEFTKIITP224 AITRVVDFAK234 KLPMFSELPE245 DQIILLKGCC 255 MEIMSLRAAV265 RYDPESDTLT275 LSGEMAVKRE285 QLKNGGLGVV295 SDAIFELGKS 305 LSAFNLDDTE315 VALLQAVLLM325 STDRSGLLVD336 KIEKSQEAYL346 LAFEHYVNHR 356 KHNIPHFWPK366 LLMKVTDLRM376 IGAHASRFLH387 MKVEPTELFP398 PLFLEVFED |
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Click to View More Binding Site Information of This Target with Different Ligands |
Different Human System Profiles of Target | Top |
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Human Similarity Proteins
of target is determined by comparing the sequence similarity of all human proteins with the target based on BLAST. The similarity proteins for a target are defined as the proteins with E-value < 0.005 and outside the protein families of the target.
A target that has fewer human similarity proteins outside its family is commonly regarded to possess a greater capacity to avoid undesired interactions and thus increase the possibility of finding successful drugs
(Brief Bioinform, 21: 649-662, 2020).
Human Tissue Distribution
of target is determined from a proteomics study that quantified more than 12,000 genes across 32 normal human tissues. Tissue Specificity (TS) score was used to define the enrichment of target across tissues.
The distribution of targets among different tissues or organs need to be taken into consideration when assessing the target druggability, as it is generally accepted that the wider the target distribution, the greater the concern over potential adverse effects
(Nat Rev Drug Discov, 20: 64-81, 2021).
Human Pathway Affiliation
of target is determined by the life-essential pathways provided on KEGG database. The target-affiliated pathways were defined based on the following two criteria (a) the pathways of the studied target should be life-essential for both healthy individuals and patients, and (b) the studied target should occupy an upstream position in the pathways and therefore had the ability to regulate biological function.
Targets involved in a fewer pathways have greater likelihood to be successfully developed, while those associated with more human pathways increase the chance of undesirable interferences with other human processes
(Pharmacol Rev, 58: 259-279, 2006).
Biological Network Descriptors
of target is determined based on a human protein-protein interactions (PPI) network consisting of 9,309 proteins and 52,713 PPIs, which were with a high confidence score of ≥ 0.95 collected from STRING database.
The network properties of targets based on protein-protein interactions (PPIs) have been widely adopted for the assessment of target’s druggability. Proteins with high node degree tend to have a high impact on network function through multiple interactions, while proteins with high betweenness centrality are regarded to be central for communication in interaction networks and regulate the flow of signaling information
(Front Pharmacol, 9, 1245, 2018;
Curr Opin Struct Biol. 44:134-142, 2017).
Human Similarity Proteins
Human Tissue Distribution
Human Pathway Affiliation
Biological Network Descriptors
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There is no similarity protein (E value < 0.005) for this target
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Note:
If a protein has TS (tissue specficity) scores at least in one tissue >= 2.5, this protein is called tissue-enriched (including tissue-enriched-but-not-specific and tissue-specific). In the plots, the vertical lines are at thresholds 2.5 and 4.
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KEGG Pathway | Pathway ID | Affiliated Target | Pathway Map |
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Neuroactive ligand-receptor interaction | hsa04080 | Affiliated Target |
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Class: Environmental Information Processing => Signaling molecules and interaction | Pathway Hierarchy | ||
Thyroid hormone signaling pathway | hsa04919 | Affiliated Target |
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Class: Organismal Systems => Endocrine system | Pathway Hierarchy |
Degree | 6 | Degree centrality | 6.45E-04 | Betweenness centrality | 1.96E-05 |
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Closeness centrality | 2.22E-01 | Radiality | 1.39E+01 | Clustering coefficient | 4.67E-01 |
Neighborhood connectivity | 4.70E+01 | Topological coefficient | 2.41E-01 | Eccentricity | 11 |
Download | Click to Download the Full PPI Network of This Target | ||||
Chemical Structure based Activity Landscape of Target | Top |
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Drug Property Profile of Target | Top | |
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(1) Molecular Weight (mw) based Drug Clustering | (2) Octanol/Water Partition Coefficient (xlogp) based Drug Clustering | |
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(3) Hydrogen Bond Donor Count (hbonddonor) based Drug Clustering | (4) Hydrogen Bond Acceptor Count (hbondacc) based Drug Clustering | |
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(5) Rotatable Bond Count (rotbonds) based Drug Clustering | (6) Topological Polar Surface Area (polararea) based Drug Clustering | |
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"RO5" indicates the cutoff set by lipinski's rule of five; "D123AB" colored in GREEN denotes the no violation of any cutoff in lipinski's rule of five; "D123AB" colored in PURPLE refers to the violation of only one cutoff in lipinski's rule of five; "D123AB" colored in BLACK represents the violation of more than one cutoffs in lipinski's rule of five |
Co-Targets | Top | |||||
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Co-Targets |
Target Poor or Non Binders | Top | |||||
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Target Poor or Non Binders |
Target Regulators | Top | |||||
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Target-regulating microRNAs | ||||||
Target-interacting Proteins |
Target Affiliated Biological Pathways | Top | |||||
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KEGG Pathway | [+] 2 KEGG Pathways | + | ||||
1 | Neuroactive ligand-receptor interaction | |||||
2 | Thyroid hormone signaling pathway | |||||
PID Pathway | [+] 1 PID Pathways | + | ||||
1 | RXR and RAR heterodimerization with other nuclear receptor | |||||
Reactome | [+] 1 Reactome Pathways | + | ||||
1 | Nuclear Receptor transcription pathway | |||||
WikiPathways | [+] 2 WikiPathways | + | ||||
1 | Endochondral Ossification | |||||
2 | Nuclear Receptors |
Target-Related Models and Studies | Top | |||||
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Target Validation |
References | Top | |||||
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REF 1 | Evaluation of thyroid hormone action in a case of generalized resistance to thyroid hormone with chronic thyroiditis: discovery of a novel heterozy... Endocr J. 2007 Dec;54(5):727-32. | |||||
REF 2 | Drugs@FDA. U.S. Food and Drug Administration. U.S. Department of Health & Human Services. 2015 | |||||
REF 3 | URL: http://www.guidetopharmacology.org Nucleic Acids Res. 2015 Oct 12. pii: gkv1037. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands. (Ligand id: 4627). | |||||
REF 4 | Current methodology to assess bioequivalence of levothyroxine sodium products is inadequate. AAPS J. 2005 Mar 30;7(1):E42-6. | |||||
REF 5 | Trusted, scientifically sound profiles of drug programs, clinical trials, safety reports, and company deals, written by scientists. Springer. 2015. Adis Insight (drug id 800037654) | |||||
REF 6 | URL: http://www.guidetopharmacology.org Nucleic Acids Res. 2015 Oct 12. pii: gkv1037. The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands. (Ligand id: 2637). | |||||
REF 7 | Drugs@FDA. U.S. Food and Drug Administration. U.S. Department of Health & Human Services. | |||||
REF 8 | Thyroid hormone resistance and pituitary enlargement after thyroid ablation in a woman on levothyroxine treatment. Thyroid. 2008 Oct;18(10):1119-23. | |||||
REF 9 | Thyroid hormone receptors in brain development and function. Nat Clin Pract Endocrinol Metab. 2007 Mar;3(3):249-59. | |||||
REF 10 | Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues. Genomics 2005 Aug;86(2):127-41. | |||||
REF 11 | Binding of 3,5,3'-triiodothyronine (T3) and its analogs to the in vitro translational products of c-erbA protooncogenes: differences in the affinity of the alpha- and beta-forms for the acetic acid analog and failure of the human testis and kidney alpha-2 products to bind T3. Mol Endocrinol. 1990 Feb;4(2):227-34. | |||||
REF 12 | Thyroid receptor ligands. 3. Design and synthesis of 3,5-dihalo-4-alkoxyphenylalkanoic acids as indirect antagonists of the thyroid hormone receptor. J Med Chem. 2005 May 5;48(9):3114-7. | |||||
REF 13 | Inhibitors of the interaction of a thyroid hormone receptor and coactivators: preliminary structure-activity relationships. J Med Chem. 2007 Nov 1;50(22):5269-80. | |||||
REF 14 | Thyroid receptor ligands. Part 7: Indirect antagonists of the thyroid hormone receptor with improved affinity. Bioorg Med Chem Lett. 2007 Apr 1;17(7):2018-21. | |||||
REF 15 | Thyroid receptor ligands. Part 5: novel bicyclic agonist ligands selective for the thyroid hormone receptor beta. Bioorg Med Chem Lett. 2006 Mar 1;16(5):1240-4. | |||||
REF 16 | Structural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function. J Mol Biol. 2006 Jul 14;360(3):586-98. | |||||
REF 17 | Identification of a new hormone-binding site on the surface of thyroid hormone receptor. Mol Endocrinol. 2014 Apr;28(4):534-45. |
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