Binding Site Information of Target
Target General Information | Top | ||||
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Target ID | T86591 | Target Info | |||
Target Name | Peroxisome proliferator-activated receptor alpha (PPARA) | ||||
Synonyms | Peroxisome proliferater-activated receptor alpha; PPARalpha; PPAR-alpha; PPAR; Nuclear receptor subfamily 1 group C member 1; NR1C1 | ||||
Target Type | Successful Target | ||||
Gene Name | PPARA | ||||
Biochemical Class | Nuclear hormone receptor | ||||
UniProt ID |
Drug Binding Sites of Target | Top | |||||
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Ligand Name: Icosapent | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-eicosapentaenoic acid (EPA) co-crystals obtained by delipidation and cross-seeding | PDB:6LXA | ||||
Method | X-ray diffraction | Resolution | 1.23 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKSNNPPF239 VIHDMETLCM249 AEKTLVAKLV 259 ANGIQNKEAE269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL 309 KYGVYEAIFA319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF 359 DFAMKFNALE369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR 409 LHLQSNHPDD419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL 459 LQEIYRDMY
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ILE241
3.245
LEU247
3.678
ALA250
3.165
GLU251
2.919
LEU254
3.528
VAL255
3.359
ARG271
4.586
ILE272
2.730
PHE273
2.914
CYS275
3.365
CYS276
2.942
GLN277
3.081
THR279
2.613
SER280
2.693
TYR314
2.629
ILE317
4.902
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Pemafibrate | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-pemafibrate co-crystals obtained by delipidation and cross-seeding | PDB:6KB4 | ||||
Method | X-ray diffraction | Resolution | 1.42 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGSNNPPFV240 IHDMETLCMA250 EKTLVAKLVA 260 NGIQNKEAEV270 RIFHCCQCTS280 VETVTELTEF290 AKAIPGFANL300 DLNDQVTLLK 310 YGVYEAIFAM320 LSSVMNKDGM330 LVAYGNGFIT340 REFLKSLRKP350 FCDIMEPKFD 360 FAMKFNALEL370 DDSDISLFVA380 AIICCGDRPG390 LLNVGHIEKM400 QEGIVHVLRL 410 HLQSNHPDDI420 FLFPKLLQKM430 ADLRQLVTEH440 AQLVQIIKKT450 ESDAALHPLL 460 QEIYRDMY
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MET220
3.259
ILE241
2.791
LEU247
3.962
ALA250
3.874
GLU251
3.640
LEU254
4.853
VAL255
4.161
ILE272
3.791
PHE273
2.680
CYS275
3.619
CYS276
2.687
GLN277
3.223
THR279
2.889
SER280
2.569
THR283
3.993
TYR314
2.736
ALA316
4.941
ILE317
3.151
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Fenofibric acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-fenofibric acid-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization | PDB:7BQ0 | ||||
Method | X-ray diffraction | Resolution | 1.77 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKASNNPP238 FVIHDMETLC248 MAEKTLVAKL 258 VANGIQNKEA268 EVRIFHCCQC278 TSVETVTELT288 EFAKAIPGFA298 NLDLNDQVTL 308 LKYGVYEAIF318 AMLSSVMNKD328 GMLVAYGNGF338 ITREFLKSLR348 KPFCDIMEPK 358 FDFAMKFNAL368 ELDDSDISLF378 VAAIICCGDR388 PGLLNVGHIE398 KMQEGIVHVL 408 RLHLQSNHPD418 DIFLFPKLLQ428 KMADLRQLVT438 EHAQLVQIIK448 KTESDAALHP 458 LLQEIYRDMY468
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .F5A or .F5A2 or .F5A3 or :3F5A;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:253 or .A:254 or .A:257 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:282 or .A:314 or .A:318 or .A:332 or .A:333 or .A:334 or .A:339 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:445 or .A:447 or .A:448 or .A:454 or .A:455 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
3.873
LEU247
3.502
ALA250
4.781
THR253
4.650
LEU254
2.918
LYS257
2.808
ILE272
3.292
PHE273
2.999
CYS275
3.337
CYS276
3.014
GLN277
3.270
THR279
2.563
SER280
2.668
GLU282
4.682
TYR314
2.671
PHE318
3.522
VAL332
4.025
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Saroglitazar | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by delipidation and cross-seeding | PDB:6LXC | ||||
Method | X-ray diffraction | Resolution | 2.03 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGPPFVIHD243 METLCMAEKT253 LVANKEAEVR 271 IFHCCQCTSV281 ETVTELTEFA291 KAIPGFANLD301 LNDQVTLLKY311 GVYEAIFAML 321 SSVMNKDGML331 VAYGNGFITR341 EFLKSLRKPF351 CDIMEPKFDF361 AMKFNALELD 371 DSDISLFVAA381 IICCGDRPGL391 LNVGHIEKMQ401 EGIVHVLRLH411 LQSNHPDDIF 421 LFPKLLQKMA431 DLRQLVTEHA441 QLVQIIKKTE451 SDAALHPLLQ461 EIYRDMY |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .EWR or .EWR2 or .EWR3 or :3EWR;style chemicals stick;color identity;select .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:278 or .A:279 or .A:280 or .A:282 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:334 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE272
3.014
PHE273
2.905
CYS275
3.329
CYS276
2.990
GLN277
3.658
CYS278
3.661
THR279
2.543
SER280
2.392
GLU282
4.460
TYR314
2.606
ILE317
4.315
PHE318
3.235
LEU321
4.245
MET330
2.721
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Bezafibrate | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-bezafibrate-SRC1 coactivator peptide co-crystals obtained by soaking | PDB:7BPZ | ||||
Method | X-ray diffraction | Resolution | 2.43 Å | Mutation | No | [1] |
PDB Sequence |
HMTADLKSLA
207 KRIYEAYLKN217 FNMNKVKARV227 ILSGKASNNP237 PFVIHDMETL247 CMAEKTLVAK 257 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .PEM or .PEM2 or .PEM3 or :3PEM;style chemicals stick;color identity;select .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:354 or .A:355 or .A:440 or .A:444 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE272
3.831
PHE273
2.921
CYS275
3.433
CYS276
2.736
GLN277
3.226
THR279
2.560
SER280
2.460
TYR314
2.481
ILE317
3.186
PHE318
3.945
LEU321
2.947
MET330
3.657
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Ligand Name: Sanguinarine | Ligand Info | |||||
Structure Description | Novel natural PPARalpha agonist with a unique binding mode | PDB:7C6Q | ||||
Method | X-ray diffraction | Resolution | 2.76 Å | Mutation | No | [2] |
PDB Sequence |
TADLKSLAKR
209 IYEAYLKNFN219 MNKVKARVIL229 SGKASNNPPF239 VIHDMETLCM249 AEKTLVAKIQ 264 NKEAEVRIFH274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY 314 EAIFAMLSSV324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK 364 FNALELDDSD374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS 414 NHPDDIFLFP424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY 464 RDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .SAU or .SAU2 or .SAU3 or :3SAU;style chemicals stick;color identity;select .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:271 or .A:272 or .A:274 or .A:275 or .A:278 or .A:279 or .A:282 or .A:333 or .A:334; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: Tesaglitazar | Ligand Info | |||||
Structure Description | CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN FROM HUMAN PPAR-ALPHA IN COMPLEX WITH THE AGONIST AZ 242 | PDB:1I7G | ||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [3] |
PDB Sequence |
ETADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGSNNPPFV240 IHDMETLCMA250 EKTLQNKEAE 269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL309 KYGVYEAIFA 319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF359 DFAMKFNALE 369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR409 LHLQSNHPDD 419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL459 LQEIYRDMY |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .AZ2 or .AZ22 or .AZ23 or :3AZ2;style chemicals stick;color identity;select .A:241 or .A:247 or .A:251 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:339 or .A:354 or .A:355 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
3.576
LEU247
3.506
GLU251
4.088
ILE272
3.910
PHE273
3.565
CYS275
3.441
CYS276
3.347
GLN277
4.010
THR279
3.876
SER280
2.681
TYR314
2.591
ILE317
4.625
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Ligand Name: GW-409544 | Ligand Info | |||||
Structure Description | The 2.5 Angstrom resolution crystal structure of the human PPARalpha ligand binding domain bound with GW409544 and a co-activator peptide. | PDB:1K7L | ||||
Method | X-ray diffraction | Resolution | 2.50 Å | Mutation | No | [4] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSG231 KASNNPPFVI241 HDMETLCMAE251 KTLVAKLVAN 261 GIQNKEAEVR271 IFHCCQCTSV281 ETVTELTEFA291 KAIPGFANLD301 LNDQVTLLKY 311 GVYEAIFAML321 SSVMNKDGML331 VAYGNGFITR341 EFLKSLRKPF351 CDIMEPKFDF 361 AMKFNALELD371 DSDISLFVAA381 IICCGDRPGL391 LNVGHIEKMQ401 EGIVHVLRLH 411 LQSNHPDDIF421 LFPKLLQKMA431 DLRQLVTEHA441 QLVQIIKKTE451 SDAALHPLLQ 461 EIYRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .544 or .5442 or .5443 or :3544;style chemicals stick;color identity;select .A:241 or .A:247 or .A:251 or .A:254 or .A:269 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:339 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
4.579
LEU247
3.815
GLU251
4.716
LEU254
3.896
GLU269
3.770
ILE272
3.825
PHE273
3.398
CYS275
3.390
CYS276
3.445
GLN277
4.016
THR279
3.849
SER280
2.723
TYR314
2.692
ILE317
4.645
PHE318
3.825
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Ligand Name: Pirinixic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-Wy14643 co-crystals obtained by co-crystallization | PDB:6KBA | ||||
Method | X-ray diffraction | Resolution | 1.82 Å | Mutation | No | [1] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSG231 SNNPPFVIHD243 METLCMAEKT253 LVAKLVANGI 263 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .WY1 or .WY12 or .WY13 or :3WY1;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:258 or .A:263 or .A:266 or .A:270 or .A:271 or .A:272 or .A:273 or .A:274 or .A:275 or .A:276 or .A:277 or .A:278 or .A:279 or .A:280 or .A:283 or .A:314 or .A:317 or .A:318 or .A:321 or .A:324 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
2.877
LEU247
2.568
ALA250
4.609
GLU251
2.114
LEU254
3.393
VAL255
2.831
LEU258
3.302
ILE263
3.605
LYS266
2.704
VAL270
4.622
ARG271
2.904
ILE272
3.140
PHE273
3.254
HIS274
2.812
CYS275
3.048
CYS276
2.833
GLN277
3.174
CYS278
3.266
THR279
3.104
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Indeglitazar | Ligand Info | |||||
Structure Description | Structure of PPARalpha with 3-[5-Methoxy-1-(4-methoxy-benzenesulfonyl)-1H-indol-3-yl]-propionic acid | PDB:3ET1 | ||||
Method | X-ray diffraction | Resolution | 2.50 Å | Mutation | No | [5] |
PDB Sequence |
ETADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKASNNPP238 FVIHDMETLC248 MAEKTLVAQN 265 KEAEVRIFHC275 CQCTSVETVT285 ELTEFAKAIP295 GFANLDLNDQ305 VTLLKYGVYE 315 AIFAMLSSVM325 NKDGMLVAYG335 NGFITREFLK345 SLRKPFCDIM355 EPKFDFAMKF 365 NALELDDSDI375 SLFVAAIICC385 GDRPGLLNVG395 HIEKMQEGIV405 HVLRLHLQSN 415 HPDDIFLFPK425 LLQKMADLRQ435 LVTEHAQLVQ445 IIKKTESDAA455 LHPLLQEIYR 465 DMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ET1 or .ET12 or .ET13 or :3ET1;style chemicals stick;color identity;select .A:269 or .A:272 or .A:273 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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GLU269
4.692
ILE272
3.466
PHE273
3.515
CYS276
3.610
GLN277
3.323
THR279
2.937
SER280
2.545
TYR314
2.580
ILE317
4.583
PHE318
3.479
LEU321
4.415
MET330
4.043
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Ligand Name: Deoxy-Bigchap | Ligand Info | |||||
Structure Description | CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN FROM HUMAN PPAR-ALPHA IN COMPLEX WITH THE AGONIST AZ 242 | PDB:1I7G | ||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [3] |
PDB Sequence |
ETADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGSNNPPFV240 IHDMETLCMA250 EKTLQNKEAE 269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL309 KYGVYEAIFA 319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF359 DFAMKFNALE 369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR409 LHLQSNHPDD 419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL459 LQEIYRDMY |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CPQ or .CPQ2 or .CPQ3 or :3CPQ;style chemicals stick;color identity;select .A:203 or .A:204 or .A:207 or .A:208 or .A:211 or .A:373 or .A:407 or .A:410 or .A:411 or .A:414; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: BMS-687453 | Ligand Info | |||||
Structure Description | Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-(methoxycarbonyl)glycine | PDB:3KDT | ||||
Method | X-ray diffraction | Resolution | 2.70 Å | Mutation | No | [6] |
PDB Sequence |
SETADLKSLA
207 KRIYEAYLKN217 FNMNKVKARV227 ILSGKASNNP237 PFVIHDMETL247 CMAEKTLVAI 263 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .7HA or .7HA2 or .7HA3 or :37HA;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
4.407
LEU247
4.636
ALA250
4.035
GLU251
4.118
LEU254
4.737
VAL255
3.977
ILE272
3.878
PHE273
3.754
CYS275
3.636
CYS276
3.135
GLN277
4.326
THR279
3.939
SER280
2.564
TYR314
2.721
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Ligand Name: Eicosatetranoic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-5,8,11,14-eicosatetraynoic acid (ETYA) co-crystals obtained by soaking | PDB:6KB0 | ||||
Method | X-ray diffraction | Resolution | 1.35 Å | Mutation | No | [1] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSG231 NNPPFVIHDM244 ETLCMAEKTL254 VAKLVANGIQ 264 NKEAEVRIFH274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY 314 EAIFAMLSSV324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK 364 FNALELDDSD374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS 414 NHPDDIFLFP424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY 464 RDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ITY or .ITY2 or .ITY3 or :3ITY;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
3.154
LEU247
3.424
ALA250
3.098
GLU251
3.214
LEU254
2.821
VAL255
2.924
ARG271
4.666
ILE272
3.512
PHE273
3.146
CYS275
3.221
CYS276
2.599
GLN277
3.295
THR279
3.029
SER280
2.593
TYR314
2.583
ILE317
3.149
|
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Arachidonic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-arachidonic acid co-crystals obtained by delipidation and cross-seeding | PDB:6LX9 | ||||
Method | X-ray diffraction | Resolution | 1.40 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKASNNPP238 FVIHDMETLC248 MAEKTLVAKL 258 VANGIQNKEA268 EVRIFHCCQC278 TSVETVTELT288 EFAKAIPGFA298 NLDLNDQVTL 308 LKYGVYEAIF318 AMLSSVMNKD328 GMLVAYGNGF338 ITREFLKSLR348 KPFCDIMEPK 358 FDFAMKFNAL368 ELDDSDISLF378 VAAIICCGDR388 PGLLNVGHIE398 KMQEGIVHVL 408 RLHLQSNHPD418 DIFLFPKLLQ428 KMADLRQLVT438 EHAQLVQIIK448 KTESDAALHP 458 LLQEIYRDMY468
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ACD or .ACD2 or .ACD3 or :3ACD;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
2.882
LEU247
3.523
ALA250
3.282
GLU251
3.616
LEU254
3.211
VAL255
3.191
ARG271
4.523
ILE272
2.700
PHE273
2.901
CYS275
3.289
CYS276
2.869
GLN277
3.111
THR279
2.636
SER280
2.683
TYR314
2.644
|
|||||
Ligand Name: Stearic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-stearic acid co-crystals obtained by delipidation and cross-seeding | PDB:6LX7 | ||||
Method | X-ray diffraction | Resolution | 1.41 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGSNNPPFV240 IHDMETLCMA250 EKTLVAKLVA 260 NGIQNKEAEV270 RIFHCCQCTS280 VETVTELTEF290 AKAIPGFANL300 DLNDQVTLLK 310 YGVYEAIFAM320 LSSVMNKDGM330 LVAYGNGFIT340 REFLKSLRKP350 FCDIMEPKFD 360 FAMKFNALEL370 DDSDISLFVA380 AIICCGDRPG390 LLNVGHIEKM400 QEGIVHVLRL 410 HLQSNHPDDI420 FLFPKLLQKM430 ADLRQLVTEH440 AQLVQIIKKT450 ESDAALHPLL 460 QEIYRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .STE or .STE2 or .STE3 or :3STE;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.152
LEU247
3.511
ALA250
3.324
GLU251
3.417
LEU254
3.523
VAL255
3.476
ARG271
4.949
ILE272
3.060
PHE273
2.931
CYS275
3.114
CYS276
2.945
GLN277
3.101
THR279
3.077
SER280
2.699
TYR314
2.599
ILE317
4.298
|
|||||
Ligand Name: GW7647 | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-GW7647 co-crystals obtained by delipidation and cross-seeding | PDB:6KB3 | ||||
Method | X-ray diffraction | Resolution | 1.45 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGPFVIHDM244 ETLCMAEKTL254 VAKLVAKEAE 269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL309 KYGVYEAIFA 319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF359 DFAMKFNALE 369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR409 LHLQSNHPDD 419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL459 LQEIYRDMY |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .2VN or .2VN2 or .2VN3 or :32VN;style chemicals stick;color identity;select .A:219 or .A:220 or .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:283 or .A:286 or .A:314 or .A:316 or .A:317 or .A:318 or .A:320 or .A:321 or .A:324 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:354 or .A:355 or .A:440 or .A:444 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ASN219
4.046
MET220
4.830
ILE241
3.339
LEU247
3.072
ALA250
4.100
GLU251
3.904
LEU254
4.078
VAL255
3.962
ILE272
3.547
PHE273
2.674
CYS275
3.099
CYS276
2.850
GLN277
3.025
THR279
2.687
SER280
2.808
THR283
2.766
GLU286
4.500
TYR314
2.579
|
|||||
Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Oleic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-oleic acid co-crystals obtained by delipidation and cross-seeding | PDB:6LX8 | ||||
Method | X-ray diffraction | Resolution | 1.54 Å | Mutation | No | [1] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSG231 NNPPFVIHDM244 ETLCMAEKTL254 VAKLVANGIQ 264 NKEAEVRIFH274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY 314 EAIFAMLSSV324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK 364 FNALELDDSD374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS 414 NHPDDIFLFP424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY 464 RDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .OLA or .OLA2 or .OLA3 or :3OLA;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.161
LEU247
3.441
ALA250
3.810
GLU251
3.506
LEU254
3.959
VAL255
3.379
ILE272
3.236
PHE273
3.142
CYS275
3.164
CYS276
2.867
GLN277
3.232
THR279
3.080
SER280
2.696
TYR314
2.600
ILE317
4.179
|
|||||
Ligand Name: Fibrates | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-clofibric acid-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization | PDB:7BPY | ||||
Method | X-ray diffraction | Resolution | 2.09 Å | Mutation | No | [1] |
PDB Sequence |
HMTADLKSLA
207 KRIYEAYLKN217 FNMNKVKARV227 ILSGKASNNP237 PFVIHDMETL247 CMAEKTLVAK 257 LVANGIQNKE267 AEVRIFHCCQ277 CTSVETVTEL287 TEFAKAIPGF297 ANLDLNDQVT 307 LLKYGVYEAI317 FAMLSSVMNK327 DGMLVAYGNG337 FITREFLKSL347 RKPFCDIMEP 357 KFDFAMKFNA367 LELDDSDISL377 FVAAIICCGD387 RPGLLNVGHI397 EKMQEGIVHV 407 LRLHLQSNHP417 DDIFLFPKLL427 QKMADLRQLV437 TEHAQLVQII447 KKTESDAALH 457 PLLQEIYRDM467 Y
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .E0O or .E0O2 or .E0O3 or :3E0O;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:332 or .A:333 or .A:334 or .A:339 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:447 or .A:454 or .A:455 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
2.502
LEU247
3.595
ALA250
4.523
GLU251
4.629
LEU254
3.163
ARG271
4.424
ILE272
3.425
PHE273
3.495
CYS275
3.383
CYS276
3.022
GLN277
3.260
THR279
2.298
SER280
2.587
TYR314
2.560
PHE318
3.561
|
|||||
Ligand Name: 2-chloro-5-nitro-N-phenylbenzamide | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-GW9662-gemfibrozil co-crystals obtained by delipidation and co-crystallization | PDB:6L38 | ||||
Method | X-ray diffraction | Resolution | 2.76 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKASNNPP238 FVIHDMETLC248 MAEKTLVAKL 258 VANGIQNKEA268 EVRIFHCCQC278 TSVETVTELT288 EFAKAIPGFA298 NLDLNDQVTL 308 LKYGVYEAIF318 AMLSSVMNKD328 GMLVAYGNGF338 ITREFLKSLR348 KPFCDIMEPK 358 FDFAMKFNAL368 ELDDSDISLF378 VAAIICCGDR388 PGLLNVGHIE398 KMQEGIVHVL 408 RLHLQSNHPD418 DIFLFPKLLQ428 KMADLRQLVT438 EHAQLVQIIK448 KTESDAALHP 458 LLQEIYRDMY468
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .GW9 or .GW92 or .GW93 or :3GW9;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:257 or .A:258 or .A:261 or .A:263 or .A:272 or .A:274 or .A:275 or .A:276 or .A:277 or .A:278 or .A:279 or .A:321 or .A:324 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:455 or .A:456 or .A:457 or .A:458; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.187
LEU247
2.926
ALA250
3.650
GLU251
4.590
LEU254
3.011
LYS257
3.229
LEU258
2.810
ASN261
2.443
ILE263
4.888
ILE272
4.062
HIS274
2.555
CYS275
3.823
CYS276
1.804
GLN277
3.714
|
|||||
Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Aleglitazar | Ligand Info | |||||
Structure Description | Aleglitazar, a new, potent, and balanced PPAR alpha/gamma agonist for the treatment of type II diabetes | PDB:3G8I | ||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [7] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSP237 PFVIHDMETL247 CMAEKTLVAK257 LKEAEVRIFH 274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY314 EAIFAMLSSV 324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK364 FNALELDDSD 374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS414 NHPDDIFLFP 424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY464 RDMY |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .RO7 or .RO72 or .RO73 or :3RO7;style chemicals stick;color identity;select .A:241 or .A:247 or .A:251 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.481
LEU247
3.535
GLU251
4.793
VAL255
3.489
ILE272
4.038
PHE273
3.330
CYS275
3.912
CYS276
3.339
GLN277
3.955
THR279
4.001
SER280
2.779
TYR314
2.682
PHE318
3.954
LEU321
3.711
|
|||||
Ligand Name: Iloprost R-isomer | Ligand Info | |||||
Structure Description | Structural basis for iloprost as a dual PPARalpha/delta agonist | PDB:3SP6 | ||||
Method | X-ray diffraction | Resolution | 2.21 Å | Mutation | No | [8] |
PDB Sequence |
EDSETADLKS
205 LAKRIYEAYL215 KNFNMNKVKA225 RVILSGKASN235 NPPFVIHDME245 TLCMAEKTLV 255 AKLVANNKEA268 EVRIFHCCQC278 TSVETVTELT288 EFAKAIPGFA298 NLDLNDQVTL 308 LKYGVYEAIF318 AMLSSVMNKD328 GMLVAYGNGF338 ITREFLKSLR348 KPFCDIMEPK 358 FDFAMKFNAL368 ELDDSDISLF378 VAAIICCGDR388 PGLLNVGHIE398 KMQEGIVHVL 408 RLHLQSNHPD418 DIFLFPKLLQ428 KMADLRQLVT438 EHAQLVQIIK448 KTESDAALHP 458 LLQEIYRDMY468
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .IL2 or .IL22 or .IL23 or :3IL2;style chemicals stick;color identity;select .A:241 or .A:247 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:283 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:354 or .A:355 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.604
LEU247
4.166
ILE272
4.167
PHE273
3.307
CYS275
3.795
CYS276
3.437
GLN277
3.601
THR279
3.247
SER280
2.464
THR283
4.934
TYR314
2.424
ILE317
3.564
|
|||||
Ligand Name: N-(3-{[2-(4-chlorophenyl)-5-methyl-1,3-oxazol-4-yl]methoxy}benzyl)-N-[(4-methylphenoxy)carbonyl]glycine | Ligand Info | |||||
Structure Description | Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-((4-methylphenoxy)carbonyl)glycine | PDB:3KDU | ||||
Method | X-ray diffraction | Resolution | 2.07 Å | Mutation | No | [6] |
PDB Sequence |
SETADLKSLA
207 KRIYEAYLKN217 FNMNKVKARV227 ILSGKASNNP237 PFVIHDMETL247 CMAEKTLVAI 263 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .NKS or .NKS2 or .NKS3 or :3NKS;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:255 or .A:269 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:447 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.917
LEU247
3.697
ALA250
3.751
GLU251
3.823
VAL255
4.150
GLU269
4.189
ILE272
3.684
PHE273
3.297
CYS275
3.802
CYS276
3.244
GLN277
4.079
THR279
4.056
SER280
2.682
TYR314
2.450
ILE317
3.879
PHE318
4.030
|
|||||
Ligand Name: (2s,3s)-1-(4-Methoxyphenyl)-3-(3-(2-(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-4-Oxoazetidine-2-Carboxylic Acid | Ligand Info | |||||
Structure Description | Crystal Structure of PPARalpha ligand binding domain with BMS-631707 | PDB:2REW | ||||
Method | X-ray diffraction | Resolution | 2.35 Å | Mutation | No | [9] |
PDB Sequence |
ETADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGPPFVIHD243 METLCMAEKT253 LQNKEAEVRI 272 FHCCQCTSVE282 TVTELTEFAK292 AIPGFANLDL302 NDQVTLLKYG312 VYEAIFAMLS 322 SVMNKDGMLV332 AYGNGFITRE342 FLKSLRKPFC352 DIMEPKFDFA362 MKFNALELDD 372 SDISLFVAAI382 ICCGDRPGLL392 NVGHIEKMQE402 GIVHVLRLHL412 QSNHPDDIFL 422 FPKLLQKMAD432 LRQLVTEHAQ442 LVQIIKKTES452 DAALHPLLQE462 IYRDM |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .REW or .REW2 or .REW3 or :3REW;style chemicals stick;color identity;select .A:241 or .A:247 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:440 or .A:444 or .A:447 or .A:448 or .A:454 or .A:455 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.483
LEU247
4.049
ILE272
4.057
PHE273
3.254
CYS275
3.632
CYS276
3.220
GLN277
3.566
THR279
4.121
SER280
2.884
TYR314
2.333
ILE317
3.740
PHE318
4.216
LEU321
3.797
MET330
3.427
LEU331
4.117
|
|||||
Ligand Name: 2-Methyl-2-[4-[2-[4-[(E)-Phenyldiazenyl]phenoxy]ethyl]phenoxy]propanoic Acid | Ligand Info | |||||
Structure Description | Structural basis for GL479 a dual Peroxisome Proliferator-Activated Receptor alpha agonist | PDB:4CI4 | ||||
Method | X-ray diffraction | Resolution | 2.30 Å | Mutation | No | [10] |
PDB Sequence |
KSLAKRIYEA
213 YLKNFNMNKV223 KARVILSPPF239 VIHDMETLCM249 AEKTLVKEAE269 VRIFHCCQCT 279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL309 KYGVYEAIFA319 MLSSVMNKDG 329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF359 DFAMKFNALE369 LDDSDISLFV 379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR409 LHLQSNHPDD419 IFLFPKLLQK 429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL459 LQEIYRDM
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .Y1N or .Y1N2 or .Y1N3 or :3Y1N;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:354 or .A:355 or .A:440 or .A:444 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.957
LEU247
3.716
ALA250
4.571
GLU251
4.403
VAL255
4.021
ILE272
4.471
PHE273
3.688
CYS275
3.864
CYS276
3.146
GLN277
3.545
THR279
3.686
SER280
2.525
TYR314
2.715
ILE317
4.526
|
|||||
Ligand Name: Tetradecylthioacetic acid | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-tetradecylthioacetic acid (TTA) co-crystals obtained by soaking | PDB:6KB1 | ||||
Method | X-ray diffraction | Resolution | 1.25 Å | Mutation | No | [1] |
PDB Sequence |
MTADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGKSNNPPF239 VIHDMETLCM249 AEKTLVAKLV 259 ANGIQNKEAE269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL 309 KYGVYEAIFA319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF 359 DFAMKFNALE369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR 409 LHLQSNHPDD419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL 459 LQEIYRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .T4T or .T4T2 or .T4T3 or :3T4T;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.510
LEU247
3.599
ALA250
4.159
GLU251
3.678
LEU254
4.267
VAL255
3.443
ILE272
3.456
PHE273
2.738
CYS275
3.352
CYS276
2.731
GLN277
2.988
THR279
2.986
SER280
2.707
TYR314
2.610
ILE317
4.063
|
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: (2S)-2-[[3-[[3-fluoranyl-4-(4-fluoranylphenoxy)phenyl]methylcarbamoyl]-4-methoxy-phenyl]methyl]butanoic acid | Ligand Info | |||||
Structure Description | HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH APHM6 OBTAINED BY SOAKING | PDB:7E5I | ||||
Method | X-ray diffraction | Resolution | 1.58 Å | Mutation | No | [11] |
PDB Sequence |
TADLKSLAKR
209 IYEAYLKNFN219 MNKVKARVIL229 SGNPPFVIHD243 METLCMAEKT253 LVAKLVANGI 263 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .HW3 or .HW32 or .HW33 or :3HW3;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:325 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:359 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.805
LEU247
3.817
ALA250
3.556
GLU251
3.822
LEU254
4.149
VAL255
3.987
ILE272
3.986
PHE273
3.494
CYS275
3.049
CYS276
3.588
GLN277
3.756
THR279
3.525
SER280
2.642
TYR314
2.615
PHE318
3.749
LEU321
3.643
|
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: (2S)-2-[[4-butoxy-3-[(pyren-1-ylcarbonylamino)methyl]phenyl]methyl]butanoic acid | Ligand Info | |||||
Structure Description | HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH YN4pai OBTAINED BY SOAKING | PDB:7E5G | ||||
Method | X-ray diffraction | Resolution | 1.66 Å | Mutation | No | [11] |
PDB Sequence |
TADLKSLAKR
209 IYEAYLKNFN219 MNKVKARVIL229 SGNPPFVIHD243 METLCMAEKT253 LVAKLVANGI 263 QNKEAEVRIF273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV 313 YEAIFAMLSS323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM 363 KFNALELDDS373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ 413 SNHPDDIFLF423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI 463 YRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .HVX or .HVX2 or .HVX3 or :3HVX;style chemicals stick;color identity;select .A:241 or .A:247 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:325 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:359 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.041
LEU247
3.672
GLU251
4.482
LEU254
4.198
VAL255
3.731
ILE272
3.929
PHE273
3.441
CYS275
3.758
CYS276
3.445
GLN277
3.834
THR279
3.320
SER280
2.621
TYR314
2.561
PHE318
4.116
LEU321
4.126
|
|||||
Ligand Name: (2s)-2-(4-Methoxy-3-{[(Pyren-1-Ylcarbonyl)amino]methyl}benzyl)butanoic Acid | Ligand Info | |||||
Structure Description | Human PPAR alpha ligand binding domain in complex with a synthetic agonist APHM13 | PDB:3VI8 | ||||
Method | X-ray diffraction | Resolution | 1.75 Å | Mutation | No | [12] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSP238 FVIHDMETLC248 MAEKTLVAKL258 VANGNKEAEV 270 RIFHCCQCTS280 VETVTELTEF290 AKAIPGFANL300 DLNDQVTLLK310 YGVYEAIFAM 320 LSSVMNKDGM330 LVAYGNGFIT340 REFLKSLRKP350 FCDIMEPKFD360 FAMKFNALEL 370 DDSDISLFVA380 AIICCGDRPG390 LLNVGHIEKM400 QEGIVHVLRL410 HLQSNHPDDI 420 FLFPKLLQKM430 ADLRQLVTEH440 AQLVQIIKKT450 ESDAALHPLL460 QEIYRDMY |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .13M or .13M2 or .13M3 or :313M;style chemicals stick;color identity;select .A:241 or .A:247 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:325 or .A:330 or .A:331 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:359 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.090
LEU247
3.742
GLU251
4.532
LEU254
4.253
VAL255
3.867
ILE272
3.857
PHE273
3.458
CYS275
3.772
CYS276
3.403
GLN277
3.762
THR279
3.453
SER280
2.536
TYR314
2.688
PHE318
3.775
LEU321
3.819
|
|||||
Ligand Name: (2s)-2-(4-Propoxy-3-{[({4-[(3s,5s,7s)-Tricyclo[3.3.1.1~3,7~]dec-1-Yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic Acid | Ligand Info | |||||
Structure Description | HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH TIPP703 OBTAINED BY SOAKING | PDB:7E5F | ||||
Method | X-ray diffraction | Resolution | 1.79 Å | Mutation | No | [11] |
PDB Sequence |
TADLKSLAKR
209 IYEAYLKNFN219 MNKVKARVIL229 SGPPFVIHDM244 ETLCMAEKTL254 VAKLVANGIQ 264 NKEAEVRIFH274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY 314 EAIFAMLSSV324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK 364 FNALELDDSD374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS 414 NHPDDIFLFP424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY 464 RDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S44 or .S442 or .S443 or :3S44;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:318 or .A:321 or .A:325 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:356 or .A:358 or .A:359 or .A:440 or .A:444 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.715
LEU247
3.616
ALA250
4.139
GLU251
3.706
LEU254
3.910
VAL255
3.831
ILE272
4.697
PHE273
3.476
CYS275
3.957
CYS276
3.571
GLN277
3.664
THR279
3.255
SER280
2.663
TYR314
2.617
PHE318
3.904
LEU321
3.842
|
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Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: Ciprofibrate, (S)- | Ligand Info | |||||
Structure Description | X-ray structure of human PPARalpha ligand binding domain-ciprofibrate co-crystals obtained by delipidation and co-crystallization | PDB:6LX5 | ||||
Method | X-ray diffraction | Resolution | 1.87 Å | Mutation | No | [1] |
PDB Sequence |
GSHMTADLKS
205 LAKRIYEAYL215 KNFNMNKVKA225 RVILSGKASN235 NPPFVIHDME245 TLCMAEKTLV 255 AKLVANGIQN265 KEAEVRIFHC275 CQCTSVETVT285 ELTEFAKAIP295 GFANLDLNDQ 305 VTLLKYGVYE315 AIFAMLSSVM325 NKDGMLVAYG335 NGFITREFLK345 SLRKPFCDIM 355 EPKFDFAMKF365 NALELDDSDI375 SLFVAAIICC385 GDRPGLLNVG395 HIEKMQEGIV 405 HVLRLHLQSN415 HPDDIFLFPK425 LLQKMADLRQ435 LVTEHAQLVQ445 IIKKTESDAA 455 LHPLLQEIYR465 DMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .C5F or .C5F2 or .C5F3 or :3C5F;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:257 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:282 or .A:314 or .A:318 or .A:332 or .A:333 or .A:334 or .A:339 or .A:351 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:447 or .A:448 or .A:454 or .A:455 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
3.104
LEU247
4.227
ALA250
4.345
GLU251
4.936
LEU254
2.701
LYS257
2.475
ARG271
4.737
ILE272
3.491
PHE273
2.923
CYS275
3.532
CYS276
3.003
GLN277
2.570
THR279
2.824
SER280
2.666
GLU282
3.599
TYR314
2.510
PHE318
3.433
|
|||||
Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
Ligand Name: 2-Methyl-2-[4-(Naphthalen-1-Yl)phenoxy]propanoic Acid | Ligand Info | |||||
Structure Description | Crystal structure of the complex PPARalpha/AL26-29 | PDB:5HYK | ||||
Method | X-ray diffraction | Resolution | 1.83 Å | Mutation | No | [13] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSP238 FVIHDMETLC248 MAEKTLVAKL258 VNKEAEVRIF 273 HCCQCTSVET283 VTELTEFAKA293 IPGFANLDLN303 DQVTLLKYGV313 YEAIFAMLSS 323 VMNKDGMLVA333 YGNGFITREF343 LKSLRKPFCD353 IMEPKFDFAM363 KFNALELDDS 373 DISLFVAAII383 CCGDRPGLLN393 VGHIEKMQEG403 IVHVLRLHLQ413 SNHPDDIFLF 423 PKLLQKMADL433 RQLVTEHAQL443 VQIIKKTESD453 AALHPLLQEI463 YRDMY |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .65W or .65W2 or .65W3 or :365W;style chemicals stick;color identity;select .A:270 or .A:273 or .A:274 or .A:276 or .A:277 or .A:280 or .A:314 or .A:318 or .A:354 or .A:355 or .A:440 or .A:444 or .A:447 or .A:448 or .A:451 or .A:454 or .A:455 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
VAL270
4.636
PHE273
3.706
HIS274
4.271
CYS276
3.715
GLN277
3.548
SER280
2.537
TYR314
2.665
PHE318
3.872
ILE354
3.666
MET355
3.731
|
|||||
Ligand Name: 1-(4-Chlorophenyl)-6-methyl-3-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid | Ligand Info | |||||
Structure Description | Human PPAR alpha ligand binding domain in complex with a synthetic agonist (compound A) | PDB:6KXX | ||||
Method | X-ray diffraction | Resolution | 1.95 Å | Mutation | No | [14] |
PDB Sequence |
SLAKRIYEAY
214 LKNFNMNKVK224 ARVILSGKAS234 NNPPFVIHDM244 ETLCMAEKTL254 VAKLVANGIQ 264 NKEAEVRIFH274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY 314 EAIFAMLSSV324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK 364 FNALELDDSD374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS 414 NHPDDIFLFP424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY 464 RDM
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .T02 or .T022 or .T023 or :3T02;style chemicals stick;color identity;select .A:269 or .A:272 or .A:273 or .A:276 or .A:277 or .A:280 or .A:314 or .A:318 or .A:321 or .A:330 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:447 or .A:456 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
GLU269
3.738
ILE272
3.597
PHE273
3.449
CYS276
3.469
GLN277
3.743
SER280
2.810
TYR314
2.513
PHE318
4.241
LEU321
3.727
MET330
4.806
LEU344
4.012
|
|||||
Ligand Name: 6-Ethyl-1-(4-fluorophenyl)-3-pentan-3-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid | Ligand Info | |||||
Structure Description | Human PPAR alpha ligand binding domain in complex with a synthetic agonist (compound B) | PDB:6KXY | ||||
Method | X-ray diffraction | Resolution | 2.00 Å | Mutation | No | [14] |
PDB Sequence |
SLAKRIYEAY
214 LKNFNMNKVK224 ARVILSGKNP237 PFVIHDMETL247 CMAEKTLVAQ264 NKEAEVRIFH 274 CCQCTSVETV284 TELTEFAKAI294 PGFANLDLND304 QVTLLKYGVY314 EAIFAMLSSV 324 MNKDGMLVAY334 GNGFITREFL344 KSLRKPFCDI354 MEPKFDFAMK364 FNALELDDSD 374 ISLFVAAIIC384 CGDRPGLLNV394 GHIEKMQEGI404 VHVLRLHLQS414 NHPDDIFLFP 424 KLLQKMADLR434 QLVTEHAQLV444 QIIKKTESDA454 ALHPLLQEIY464 RDM |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .T06 or .T062 or .T063 or :3T06;style chemicals stick;color identity;select .A:269 or .A:272 or .A:273 or .A:276 or .A:277 or .A:280 or .A:314 or .A:318 or .A:321 or .A:330 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:440 or .A:443 or .A:444 or .A:447 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
GLU269
4.147
ILE272
3.337
PHE273
3.334
CYS276
3.324
GLN277
3.289
SER280
2.867
TYR314
2.376
PHE318
4.471
LEU321
4.148
MET330
4.539
LEU344
3.514
|
|||||
Ligand Name: (2r,3e)-2-{4-[(5-Methyl-2-Phenyl-1,3-Oxazol-4-Yl)methoxy]benzyl}-3-(Propoxyimino)butanoic Acid | Ligand Info | |||||
Structure Description | the crystal structure of the human PPARaplpha ligand binding domain in complex with a a-hydroxyimino phenylpropanoic acid | PDB:2NPA | ||||
Method | X-ray diffraction | Resolution | 2.30 Å | Mutation | No | [15] |
PDB Sequence |
ETADLKSLAK
208 RIYEAYLKNF218 NMNKVKARVI228 LSGAASNNPP238 FVIHDMETLC248 MAEKTLVAKL 258 VANGIQNKEA268 EVRIFHCCQC278 TSVETVTELT288 EFAKAIPGFA298 NLDLNDQVTL 308 LKYGVYEAIF318 AMLSSVMNKD328 GMLVAYGNGF338 ITREFLKSLR348 KPFCDIMEPK 358 FDFAMKFNAL368 ELDDSDISLF378 VAAIICCGDR388 PGLLNVGHIE398 KMQEGIVHVL 408 RLHLQSNHPD418 DIFLFPKLLQ428 KMADLRQLVT438 EHAQLVQIIK448 KTESDAALHP 458 LLQEIYRDM
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .MMB or .MMB2 or .MMB3 or :3MMB;style chemicals stick;color identity;select .A:241 or .A:247 or .A:254 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:331 or .A:332 or .A:339 or .A:344 or .A:347 or .A:351 or .A:354 or .A:355 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.694
LEU247
4.127
LEU254
3.899
ILE272
3.655
PHE273
3.276
CYS275
3.554
CYS276
3.308
GLN277
3.642
THR279
3.910
SER280
2.879
TYR314
2.526
ILE317
4.916
PHE318
4.455
LEU321
3.670
|
|||||
Ligand Name: GW 6471 | Ligand Info | |||||
Structure Description | Crystal structure of the human PPAR-alpha ligand-binding domain in complex with an antagonist GW6471 and a SMRT corepressor motif | PDB:1KKQ | ||||
Method | X-ray diffraction | Resolution | 3.00 Å | Mutation | No | [16] |
PDB Sequence |
TADLKSLAKR
209 IYEAYLKNFN219 MNKVKARVIL229 SGKASNNPPF239 VIHDMETLCM249 AEKTLVAKLV 259 ANGIQNKEAE269 VRIFHCCQCT279 SVETVTELTE289 FAKAIPGFAN299 LDLNDQVTLL 309 KYGVYEAIFA319 MLSSVMNKDG329 MLVAYGNGFI339 TREFLKSLRK349 PFCDIMEPKF 359 DFAMKFNALE369 LDDSDISLFV379 AAIICCGDRP389 GLLNVGHIEK399 MQEGIVHVLR 409 LHLQSNHPDD419 IFLFPKLLQK429 MADLRQLVTE439 HAQLVQIIKK449 TESDAALHPL 459 LQEIYRDMY
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .471 or .4712 or .4713 or :3471;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:269 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:347 or .A:351 or .A:352 or .A:354 or .A:355 or .A:440 or .A:444 or .A:456; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
ILE241
4.030
LEU247
4.052
ALA250
4.348
GLU251
4.330
LEU254
3.159
GLU269
2.843
ILE272
3.313
PHE273
3.666
CYS275
3.328
CYS276
3.398
GLN277
3.702
THR279
4.666
SER280
3.297
TYR314
3.336
ILE317
4.318
|
|||||
Ligand Name: (4~{z},7~{z},10~{z},13~{z},19~{z})-17-Oxidanylidenedocosa-4,7,10,13,19-Pentaenoic Acid | Ligand Info | |||||
Structure Description | Ternary complex of hPPARalpha ligand binding domain, 17-oxoDHA and a SRC1 peptide | PDB:5AZT | ||||
Method | X-ray diffraction | Resolution | 3.45 Å | Mutation | Yes | [17] |
PDB Sequence |
KSLAKRIYEA
213 YLKNFNMNKV223 KARVILSNNP237 PFVIHDMETL247 CMAEKTLVAK257 LVANGIQNKE 267 AEVRIFHCCQ277 CTSVETVTEL287 TEFAKAIPGF297 ANLDLNDQVT307 LLKYGVYEAI 317 FAMLSSVMNK327 DGMLVAYGNG337 FITREFLKSL347 RKPFCDIMEP357 KFDFAMKFNA 367 LELDDSDISL377 FVAAIICCGD387 RPGLLNVGHI397 EKMQEGIVHV407 LRLHLQSNHP 417 DDIFLLPKLL427 QKMADLRQLV437 TEHAQLVQII447 KKTESDAALH457 PLLQEIYRDM 467 Y
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .4M5 or .4M52 or .4M53 or :34M5;style chemicals stick;color identity;select .A:239 or .A:241 or .A:247 or .A:250 or .A:251 or .A:256 or .A:260 or .A:271 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:321 or .A:330 or .A:332 or .A:333 or .A:336 or .A:337 or .A:338 or .A:440 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
PHE239
4.182
ILE241
3.784
LEU247
4.319
ALA250
3.819
GLU251
3.230
ALA256
3.934
ALA260
4.417
ARG271
4.823
ILE272
4.452
PHE273
4.158
CYS275
1.785
CYS276
3.263
GLN277
4.386
|
|||||
Ligand Name: 2-Methyl-2-(4-((4-methyl-2-(4-(trifluoromethyl)phenyl)thiazole-5-carboxamido)methyl)phenoxy)propanoic acid | Ligand Info | |||||
Structure Description | a crystal structure of PPAR alpha bound with SRC1 peptide and GW735 | PDB:2P54 | ||||
Method | X-ray diffraction | Resolution | 1.79 Å | Mutation | No | [18] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSG231 KASNNPPFVI241 HDMETLCMAE251 KTLVAKLVAN 261 GIQNKEAEVR271 IFHCCQCTSV281 ETVTELTEFA291 KAIPGFANLD301 LNDQVTLLKY 311 GVYEAIFAML321 SSVMNKDGML331 VAYGNGFITR341 EFLKSLRKPF351 CDIMEPKFDF 361 AMKFNALELD371 DSDISLFVAA381 IICCGDRPGL391 LNVGHIEKMQ401 EGIVHVLRLH 411 LQSNHPDDIF421 LFPKLLQKMA431 DLRQLVTEHA441 QLVQIIKKTE451 SDAALHPLLQ 461 EIYRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .735 or .7352 or .7353 or :3735;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:254 or .A:255 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:456 or .A:460 or .A:464; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
3.413
LEU247
3.436
ALA250
3.894
GLU251
3.629
LEU254
4.028
VAL255
3.386
ILE272
3.727
PHE273
2.782
CYS275
3.729
CYS276
2.936
GLN277
2.978
THR279
3.416
SER280
2.871
TYR314
2.528
ILE317
3.847
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Ligand Name: (2S)-3-(4-{[2-(4-chlorophenyl)-1,3-thiazol-4-yl]methoxy}-2-methylphenyl)-2-ethoxypropanoic acid | Ligand Info | |||||
Structure Description | Design and biological evaluation of novel, balanced dual PPARa/g agonists | PDB:3FEI | ||||
Method | X-ray diffraction | Resolution | 2.40 Å | Mutation | No | [19] |
PDB Sequence |
DLKSLAKRIY
211 EAYLKNFNMN221 KVKARVILSP238 FVIHDMETLC248 MAEKEAEVRI272 FHCCQCTSVE 282 TVTELTEFAK292 AIPGFANLDL302 NDQVTLLKYG312 VYEAIFAMLS322 SVMNKDGMLV 332 AYGNGFITRE342 FLKSLRKPFC352 DIMEPKFDFA362 MKFNALELDD372 SDISLFVAAI 382 ICCGDRPGLL392 NVGHIEKMQE402 GIVHVLRLHL412 QSNHPDDIFL422 FPKLLQKMAD 432 LRQLVTEHAQ442 LVQIIKKTES452 DAALHPLLQE462 IYRDMY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CTM or .CTM2 or .CTM3 or :3CTM;style chemicals stick;color identity;select .A:241 or .A:247 or .A:250 or .A:251 or .A:272 or .A:273 or .A:275 or .A:276 or .A:277 or .A:279 or .A:280 or .A:314 or .A:317 or .A:318 or .A:321 or .A:330 or .A:332 or .A:333 or .A:339 or .A:344 or .A:354 or .A:355 or .A:358 or .A:440 or .A:444 or .A:460 or .A:464; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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ILE241
4.100
LEU247
3.957
ALA250
4.113
GLU251
4.536
ILE272
4.388
PHE273
3.504
CYS275
3.764
CYS276
3.128
GLN277
4.203
THR279
4.108
SER280
2.725
TYR314
2.487
ILE317
4.837
PHE318
3.314
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References | Top | ||||
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REF 1 | PPARAlpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. iScience. 2020 Oct 23;23(11):101727. | ||||
REF 2 | Structural Basis for PPARs Activation by The Dual PPARAlpha/Gamma Agonist Sanguinarine: A Unique Mode of Ligand Recognition. Molecules. 2021 Oct 3;26(19):6012. | ||||
REF 3 | Structure of the PPARalpha and -gamma ligand binding domain in complex with AZ 242; ligand selectivity and agonist activation in the PPAR family. Structure. 2001 Aug;9(8):699-706. | ||||
REF 4 | Structural determinants of ligand binding selectivity between the peroxisome proliferator-activated receptors. Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13919-24. | ||||
REF 5 | Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent. Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):262-7. | ||||
REF 6 | Discovery of an oxybenzylglycine based peroxisome proliferator activated receptor alpha selective agonist 2-((3-((2-(4-chlorophenyl)-5-methyloxazol... J Med Chem. 2010 Apr 8;53(7):2854-64. | ||||
REF 7 | Aleglitazar, a new, potent, and balanced dual PPARalpha/gamma agonist for the treatment of type II diabetes. Bioorg Med Chem Lett. 2009 May 1;19(9):2468-73. | ||||
REF 8 | Structural basis for iloprost as a dual peroxisome proliferator-activated receptor alpha/delta agonist. J Biol Chem. 2011 Sep 9;286(36):31473-9. | ||||
REF 9 | Discovery of Azetidinone Acids as Conformationally-Constrained Dual (alpha/gamma) PPAR Activators | ||||
REF 10 | Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor Alpha/Gamma. J Struct Biol. 2015 Sep;191(3):332-40. | ||||
REF 11 | Crystal Structures of the Human Peroxisome Proliferator-Activated Receptor (PPAR)Alpha Ligand-Binding Domain in Complexes with a Series of Phenylpropanoic Acid Derivatives Generated by a Ligand-Exchange Soaking Method. Biol Pharm Bull. 2021;44(9):1202-1209. | ||||
REF 12 | Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype. J Med Chem. 2012 Jan 26;55(2):893-902. | ||||
REF 13 | Structural basis for PPAR partial or full activation revealed by a novel ligand binding mode. Sci Rep. 2016 Oct 6;6:34792. | ||||
REF 14 | Structural Basis for PPARAlpha Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives. Sci Rep. 2020 May 6;10(1):7623. | ||||
REF 15 | Design and synthesis of oxime ethers of alpha-acyl-beta-phenylpropanoic acids as PPAR dual agonists. Bioorg Med Chem Lett. 2007 Feb 15;17(4):937-41. | ||||
REF 16 | Structural basis for antagonist-mediated recruitment of nuclear co-repressors by PPARalpha. Nature. 2002 Feb 14;415(6873):813-7. | ||||
REF 17 | 17-OxoDHA Is a PPARAlpha/Gamma Dual Covalent Modifier and Agonist. ACS Chem Biol. 2016 Sep 16;11(9):2447-55. | ||||
REF 18 | Substituted 2-[(4-aminomethyl)phenoxy]-2-methylpropionic acid PPARalpha agonists. 1. Discovery of a novel series of potent HDLc raising agents. J Med Chem. 2007 Feb 22;50(4):685-95. | ||||
REF 19 | Design and biological evaluation of novel, balanced dual PPARalpha/gamma agonists. ChemMedChem. 2009 Jun;4(6):951-6. |
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