Binding Site Information of Target
| Target General Information | Top | ||||
|---|---|---|---|---|---|
| Target ID | T88360 | Target Info | |||
| Target Name | Respiratory syncytial virus protein N (RSV N) | ||||
| Synonyms | RSV Protein N; RSV Nucleoprotein; RSV Nucleocapsid protein; N | ||||
| Target Type | Clinical trial Target | ||||
| Gene Name | RSV N | ||||
| Biochemical Class | Paramyxoviruses nucleocapsid | ||||
| UniProt ID | |||||
| Drug Binding Sites of Target | Top | |||||
|---|---|---|---|---|---|---|
| Ligand Name: L-phenylalanine | Ligand Info | |||||
| Structure Description | N-terminal globular domain of the RSV Nucleoprotein in complex with C- terminal phenylalanine of the Phosphoprotein | PDB:4UC8 | ||||
| Method | X-ray diffraction | Resolution | 2.00 Å | Mutation | No | [1] |
| PDB Sequence |
SIDTPNYDVQ
41 KHINKLCGML51 LITEDANHKF61 TGLIGMLYAM71 SRLGREDTIK81 ILRDAGYHVK 91 ANGVDVTTHR101 QDINGKEMKF111 EVLTLASLTT121 EIQINIEIES131 RKSYKKMLKE 141 MGEVAPEYRH151 DSPDCGMIIL161 CIAALVITKL171 AAGDRSGLTA181 VIRRANNVLK 191 NEMKRYKGLL201 PKDIANSFYE211 VFEKHPHFID221 VFVHFGIAQS231 STKGGSRVEG 241 IFAGLFMNAY251 GL
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| Click to View More Binding Site Information of This Target and Ligand Pair | ||||||
| Ligand Name: L-aspartic acid | Ligand Info | |||||
| Structure Description | N-terminal globular domain of the RSV Nucleoprotein in complex with C- terminal dipeptide of the Phosphoprotein | PDB:4UC9 | ||||
| Method | X-ray diffraction | Resolution | 2.40 Å | Mutation | No | [1] |
| PDB Sequence |
SIDTPNYDVQ
41 KHINKLCGML51 LITEDANHKF61 TGLIGMLYAM71 SRLGREDTIK81 ILRDAGYHVK 91 ANGVDVTTHR101 QDINEMKFEV113 LTLASLTTEI123 QINIEIESRK133 SYKKMLKEMG 143 EVAPEYRHDS153 PDCGMIILCI163 AALVITKLAA173 GDRSGLTAVI183 RRANNVLKNE 193 MKRYKGLLPK203 DIANSFYEVF213 EKHPHFIDVF223 VHFGIAQSST233 RGGSRVEGIF 243 AGLFMNAYG
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| Ligand Name: 1-[(2,4-dichlorophenyl)methyl]pyrazole-3,5-dicarboxylic Acid | Ligand Info | |||||
| Structure Description | N-terminal globular domain of the RSV Nucleoprotein in complex with the Nucleoprotein Phosphoprotein interaction inhibitor M76 | PDB:4UCC | ||||
| Method | X-ray diffraction | Resolution | 2.05 Å | Mutation | No | [1] |
| PDB Sequence |
DSIDTPNYDV
40 QKHINKLCGM50 LLITEDANHK60 FTGLIGMLYA70 MSRLGREDTI80 KILRDAGYHV 90 KANGVDVTTH100 RQDINGKEMK110 FEVLTLASLT120 TEIQINIEIE130 SRKSYKKMLK 140 EMGEVAPEYR150 HDSPDCGMII160 LCIAALVITK170 LAAGDRSGLT180 AVIRRANNVL 190 KNEMKRYKGL200 LPKDIANSFY210 EVFEKHPHFI220 DVFVHFGIAQ230 SSTRGGSRVE 240 GIFAGLFMNA250 YGL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ZKW or .ZKW2 or .ZKW3 or :3ZKW;style chemicals stick;color identity;select .A:46 or .A:50 or .A:53 or .A:128 or .A:131 or .A:132 or .A:135 or .A:144 or .A:150 or .A:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| Ligand Name: 1-[(2-chlorophenyl)methyl]pyrazole-3,5-dicarboxylic Acid | Ligand Info | |||||
| Structure Description | N-terminal globular domain of the RSV Nucleoprotein in complex with the Nucleoprotein Phosphoprotein interaction inhibitor M81 | PDB:4UCD | ||||
| Method | X-ray diffraction | Resolution | 2.66 Å | Mutation | No | [1] |
| PDB Sequence |
SIDTPNYDVQ
41 KHINKLCGML51 LITEDANHKF61 TGLIGMLYAM71 SRLGREDTIK81 ILRDAGYHVK 91 ANGVDVTTHR101 QDINGKEMKF111 EVLTLASLTT121 EIQINIEIES131 RKSYKKMLKE 141 MGEVAPEYRH151 DSPDCGMIIL161 CIAALVITKL171 AAGRSGLTAV182 IRRANNVLKN 192 EMKRYKGLLP202 KDIANSFYEV212 FEKHPHFIDV222 FVHFGIAQSS232 TGGSRVEGIF 243 AGLFMNAYGL253
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .M81 or .M812 or .M813 or :3M81;style chemicals stick;color identity;select .A:46 or .A:50 or .A:53 or .A:128 or .A:131 or .A:132 or .A:135 or .A:144 or .A:150 or .A:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| Ligand Name: 1-[(4-fluorophenyl)methyl]pyrazole-3,5-dicarboxylic Acid | Ligand Info | |||||
| Structure Description | N-terminal globular domain of the RSV Nucleoprotein in complex with the Nucleoprotein Phosphoprotein interaction inhibitor M72 | PDB:4UCE | ||||
| Method | X-ray diffraction | Resolution | 2.95 Å | Mutation | No | [1] |
| PDB Sequence |
SIDTPNYDVQ
41 KHINKLCGML51 LITEDANHKF61 TGLIGMLYAM71 SRLGREDTIK81 ILRDAGYHVK 91 ANGVDVTTHR101 QDINGKEMKF111 EVLTLASLTT121 EIQINIEIES131 RKSYKKMLKE 141 MGEVAPEYRH151 DSPDCGMIIL161 CIAALVITKL171 ARSGLTAVIR184 RANNVLKNEM 194 KRYKGLLPKD204 IANSFYEVFE214 KHPHFIDVFV224 HFGIAQSSTR234 GGSRVEGIFA 244 GLFMNAYG
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .MZS or .MZS2 or .MZS3 or :3MZS;style chemicals stick;color identity;select .A:50 or .A:53 or .A:128 or .A:131 or .A:132 or .A:135 or .A:144 or .A:150 or .A:151 or .A:152; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| References | Top | ||||
|---|---|---|---|---|---|
| REF 1 | A Druggable Pocket at the Nucleocapsid/Phosphoprotein Interaction Site of Human Respiratory Syncytial Virus. J Virol. 2015 Nov;89(21):11129-43. | ||||
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