Target Binding Site Detail
Target General Information | Top | ||||
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Target ID | T80423 | Target Info | |||
Target Name | von Hippel-Lindau disease tumor suppressor (VHL) | ||||
Synonyms | pVHL; Protein G7 | ||||
Target Type | Patented-recorded Target | ||||
Gene Name | VHL | ||||
UniProt ID |
Ligand General Information | Top | ||||
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Ligand Name | S-(Dimethylarsenic)Cysteine | Ligand Info | |||
Canonical SMILES | C[As](C)SCC(C(=O)O)N | ||||
InChI | 1S/C5H12AsNO2S/c1-6(2)10-3-4(7)5(8)9/h4H,3,7H2,1-2H3,(H,8,9)/t4-/m0/s1 | ||||
InChIKey | UKLXSOVDMSQHMM-BYPYZUCNSA-N | ||||
PubChem Compound ID | 17753880 |
Drug Binding Sites of Target | Top | |||||
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PDB ID: 4B9K pVHL-ELOB-ELOC complex_(2S,4R)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide bound | ||||||
Method | X-ray diffraction | Resolution | 2.00 Å | Mutation | No | [1] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNQ145 PIFANITLPV155 YTLKERCLQV165 VRSLVKPENY 175 RRLDIVRSLY185 EDLEDHPNVQ195 KDLERLT
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PDB ID: 4AWJ pVHL:EloB:EloC complex, in complex with capped Hydroxyproline | ||||||
Method | X-ray diffraction | Resolution | 2.50 Å | Mutation | No | [2] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 PIFANITLPV155 YTLKERCLQV165 VRSLVKPENY 175 RRLDIVRSLY185 EDLEDHPNVQ195 KDLER
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PDB ID: 6GMN pVHL:EloB:EloC in complex with methyl 4H-furo[3,2-b]pyrrole-5-carboxylate | ||||||
Method | X-ray diffraction | Resolution | 1.94 Å | Mutation | No | [3] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 PIFANITLPV155 YTLKERCLQV165 VRSLVKPENY 175 RRLDIVRSLY185 EDLEDHPNVQ195 KDLERL
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PDB ID: 4W9F pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 5) | ||||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLND143 GQPIFANITL153 PVYTLKERCL163 QVVRSLVKPE 173 NYRRLDIVRS183 LYEDLEDHPN193 VQKDLERLTQ203
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Click to Show 3D Structure of This Binding Site
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PDB ID: 4W9H pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-acetamido-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 7) | ||||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 4W9K pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3-phenylpropanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 14) | ||||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5NVV pVHL:EloB:EloC in complex with (2S,4R)-4-hydroxy-1-((S)-2-(2-hydroxyacetamido)-3,3-dimethylbutanoyl)-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3) | ||||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5NW1 pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclobutanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 18) | ||||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4BKS von Hippel Lindau protein:ElonginB:ElonginC complex, in complex with (2S,4R)-1-ethanoyl-N-[[4-(1,3-oxazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [6] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNQ145 PIFANITLPV155 YTLKERCLQV165 VRSLVKPENY 175 RRLDIVRSLY185 EDLEDHPNVQ195 KDLERLT
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9C pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(oxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 2) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9D pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methyloxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9J pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-4-methylpentanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 13) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9L pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3,3-dimethylbutanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 15) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 5NVW pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5NVX pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-fluorocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5NW2 pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-3,3-dimethyl-2-(oxetane-3-carboxamido)butanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 19) | ||||||
Method | X-ray diffraction | Resolution | 2.20 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5NW0 pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetamidocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 17) | ||||||
Method | X-ray diffraction | Resolution | 2.30 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 6GFZ pVHL:EloB:EloC in complex with modified VH032 containing (3S,4S)-3-fluoro-4-hydroxyproline (ligand 14b) | ||||||
Method | X-ray diffraction | Resolution | 2.30 Å | Mutation | No | [7] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 4BKT von Hippel Lindau protein:ElonginB:ElonginC complex, in complex with (2S,4R)-N-methyl-1-[2-(3-methyl-1,2-oxazol-5-yl)ethanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide | ||||||
Method | X-ray diffraction | Resolution | 2.35 Å | Mutation | No | [6] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 QPIFANITLP154 VYTLKERCLQ164 VVRSLVKPEN 174 YRRLDIVRSL184 YEDLEDHPNV194 QKDLERL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:105 or .C:106 or .C:107 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9I pVHL:EloB:EloC in complex with (2S,4R)-1-((2S,4R)-1-acetyl-4-hydroxypyrrolidine-2-carbonyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10) | ||||||
Method | X-ray diffraction | Resolution | 2.40 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 5LLI pVHL:EloB:EloC in complex with VH298 | ||||||
Method | X-ray diffraction | Resolution | 2.40 Å | Mutation | No | [8] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202 Q
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 6GMX pVHL:EloB:EloC in complex with 6-chlorothiochroman-4-one | ||||||
Method | X-ray diffraction | Resolution | 2.53 Å | Mutation | No | [3] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 QPIFANITLP154 VYTLKERCLQ164 VVRSLVKPEN 174 YRRLDIVRSL184 YEDLEDHPNV194 QKDLERL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 4W9E pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(thiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 4) | ||||||
Method | X-ray diffraction | Resolution | 2.60 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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PDB ID: 4W9G pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(3-methyl-4-(thiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6) | ||||||
Method | X-ray diffraction | Resolution | 2.70 Å | Mutation | No | [4] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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PDB ID: 5NVZ pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetylcyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 16) | ||||||
Method | X-ray diffraction | Resolution | 2.70 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202 Q
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PDB ID: 6GFY pVHL:EloB:EloC in complex with modified VH032 containing (3R,4S)-3-fluoro-4-hydroxyproline (ligand 14a) | ||||||
Method | X-ray diffraction | Resolution | 2.70 Å | Mutation | No | [7] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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PDB ID: 6GMQ pVHL:EloB:EloC in complex with (4-(1H-pyrrol-1-yl)phenyl)methanol | ||||||
Method | X-ray diffraction | Resolution | 2.75 Å | Mutation | No | [3] |
PDB Sequence |
LRSVNSREPS
72 QVIFNRSPRV83 VLPVWLNFDG93 EPQPYPTLPP103 GTGRRIHSYR113 GHLWLFRDAG 123 THDGLLVNQT133 ELFVPSLNPI147 FANITLPVYT157 LKERCLQVVR167 SLVKPENYRR 177 LDIVRSLYED187 LEDHPNVQKD197 LERL
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PDB ID: 5NVY pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-acetamidopropanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl) pyrrolidine-2-carboxamide (ligand 11) | ||||||
Method | X-ray diffraction | Resolution | 2.90 Å | Mutation | No | [5] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 6FMJ pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-Acetamidopropanethioyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl) benzyl)pyrrolidine-2-carboxamide (ligand 3) | ||||||
Method | X-ray diffraction | Resolution | 2.45 Å | Mutation | No | [9] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
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PDB ID: 6FMK pVHL:EloB:EloC in complex with N-((S)-1-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamothioyl) pyrrolidin-1-yl)-1-thioxopropan-2-yl)acetamide (ligand 4) | ||||||
Method | X-ray diffraction | Resolution | 2.75 Å | Mutation | No | [9] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:101 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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PDB ID: 6FMI pVHL:EloB:EloC in complex with N-((S)-1-((2S,4R)-4-Hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamothioyl) pyrrolidin-1-yl)-1-oxopropan-2-yl)acetamide (ligand 2) | ||||||
Method | X-ray diffraction | Resolution | 2.80 Å | Mutation | No | [9] |
PDB Sequence |
VLRSVNSREP
71 SQVIFNRSPR82 VVLPVWLNFD92 GEPQPYPTLP102 PGTGRRIHSY112 RGHLWLFRDA 122 GTHDGLLVNQ132 TELFVPSLNV142 DGQPIFANIT152 LPVYTLKERC162 LQVVRSLVKP 172 ENYRRLDIVR182 SLYEDLEDHP192 NVQKDLERLT202
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set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CAS or .CAS2 or .CAS3 or :3CAS;style chemicals stick;color identity;select .C:75 or .C:76 or .C:78 or .C:79 or .C:104 or .C:105 or .C:106 or .C:148 or .C:149 or .C:150 or .C:151; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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References | Top | ||||
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REF 1 | Small-molecule inhibitors of the interaction between the E3 ligase VHL and HIF1Alpha. Angew Chem Int Ed Engl. 2012 Nov 12;51(46):11463-7. | ||||
REF 2 | Dissecting fragment-based lead discovery at the von Hippel-Lindau protein:hypoxia inducible factor 1Alpha protein-protein interface. Chem Biol. 2012 Oct 26;19(10):1300-12. | ||||
REF 3 | Surface Probing by Fragment-Based Screening and Computational Methods Identifies Ligandable Pockets on the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase. J Med Chem. 2018 Aug 23;61(16):7387-7393. | ||||
REF 4 | Structure-guided design and optimization of small molecules targeting the protein-protein interaction between the von Hippel-Lindau (VHL) E3 ubiquitin ligase and the hypoxia inducible factor (HIF) alpha subunit with in vitro nanomolar affinities. J Med Chem. 2014 Oct 23;57(20):8657-63. | ||||
REF 5 | Group-Based Optimization of Potent and Cell-Active Inhibitors of the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase: Structure-Activity Relationships Leading to the Chemical Probe (2S,4R)-1-((S)-2-(1-Cyanocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (VH298). J Med Chem. 2018 Jan 25;61(2):599-618. | ||||
REF 6 | Is NMR Fragment Screening Fine-Tuned to Assess Druggability of Protein-Protein Interactions?. ACS Med Chem Lett. 2014 Jan 9;5(1):23-28. | ||||
REF 7 | 3-Fluoro-4-hydroxyprolines: Synthesis, Conformational Analysis, and Stereoselective Recognition by the VHL E3 Ubiquitin Ligase for Targeted Protein Degradation. J Am Chem Soc. 2018 Jul 25;140(29):9299-9313. | ||||
REF 8 | Potent and selective chemical probe of hypoxic signalling downstream of HIF-Alpha hydroxylation via VHL inhibition. Nat Commun. 2016 Nov 4;7:13312. | ||||
REF 9 | Thioamide substitution to probe the hydroxyproline recognition of VHL ligands. Bioorg Med Chem. 2018 Jul 15;26(11):2992-2995. |
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