Target Binding Site Detail
| Target General Information | Top | ||||
|---|---|---|---|---|---|
| Target ID | T77721 | Target Info | |||
| Target Name | Glycerol-3-phosphate dehydrogenase (GPD1) | ||||
| Synonyms | Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPDH-C; GPD-C | ||||
| Target Type | Literature-reported Target | ||||
| Gene Name | GPD1 | ||||
| Biochemical Class | Short-chain dehydrogenases reductase | ||||
| UniProt ID | |||||
| Ligand General Information | Top | ||||
|---|---|---|---|---|---|
| Ligand Name | Dihydroxyacetone phosphate | Ligand Info | |||
| Canonical SMILES | C(C(=O)COP(=O)(O)O)O | ||||
| InChI | 1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h4H,1-2H2,(H2,6,7,8) | ||||
| InChIKey | GNGACRATGGDKBX-UHFFFAOYSA-N | ||||
| PubChem Compound ID | 668 | ||||
| Drug Binding Sites of Target | Top | |||||
|---|---|---|---|---|---|---|
| PDB ID: 6E90 Ternary complex of human glycerol 3-phosphate dehydrogenase | ||||||
| Method | X-ray diffraction | Resolution | 2.05 Å | Mutation | No | [1] |
| PDB Sequence |
ASKKVCIVGS
11 GNWGSAIAKI21 VGGNAAQLAQ31 FDPRVTMWVF41 EEDIGGKKLT51 EIINTQHENV 61 KYLPGHKLPP71 NVVAVPDVVQ81 AAEDADILIF91 VVPHQFIGKI101 CDQLKGHLKA 111 NATGISLIKG121 VDEGPNGLKL131 ISEVIGERLG141 IPMSVLMGAN151 IASEVADEKF 161 CETTIGCKDP171 AQGQLLKELM181 QTPNFRITVV191 QEVDTVEICG201 ALKNVVAVGA 211 GFCDGLGFGD221 NTKAAVIRLG231 LMEMIAFAKL241 FCSSATFLES255 CGVADLITTC 265 YGGRNRKVAE275 AFARTGKSIE285 QLEKELLNGQ295 KLQGPETARE305 LYSILQHKGL 315 VDKFPLFMAV325 YKVCYEGQPV335 GEFIHCLQNH345 PEHM
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| PDB ID: 1WPQ Ternary Complex Of Glycerol 3-phosphate Dehydrogenase 1 with NAD and dihydroxyactone | ||||||
| Method | X-ray diffraction | Resolution | 2.50 Å | Mutation | No | [2] |
| PDB Sequence |
ASKKVCIVGS
11 GNWGSAIAKI21 VGGNAAQLAQ31 FDPRVTMWVF41 EEDIGGKKLT51 EIINTQHENV 61 KYLPGHKLPP71 NVVAVPDVVQ81 AAEDADILIF91 VVPHQFIGKI101 CDQLKGHLKA 111 NPTGISLIKG121 VDEGPNGLKL131 ISEVIGERLG141 IPMSVLMGAN151 IASEVADEKF 161 CETTIGCKDP171 AQGQLLKELM181 QTPNFRITVV191 QEVDTVEICG201 ALKNVVAVGA 211 GFCDGLGFGD221 NTKAAVIRLG231 LMEMIAFAKL241 FCSGPVSSAT251 FLESCGVADL 261 ITTCYGGRNR271 KVAEAFARTG281 KSIEQLEKEL291 LNGQKLQGPE301 TARELYSILQ 311 HKGLVDKFPL321 FMAVYKVCYE331 GQPVGEFIHC341 LQNHPEHM
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| References | Top | ||||
|---|---|---|---|---|---|
| REF 1 | Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies. Biochemistry. 2019 Feb 26;58(8):1061-1073. | ||||
| REF 2 | Crystal structures of human glycerol 3-phosphate dehydrogenase 1 (GPD1). J Mol Biol. 2006 Mar 31;357(3):858-69. | ||||
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