Binding Site Information of Target

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Target General Information
Drug Binding Sites of Target
References
Target General Information  Top
Target ID T63851 Target Info
Target Name Cyclin-dependent kinase-like 1 (CDKL1)
Synonyms Serine/threonine-protein kinase KKIALRE; Protein kinase p42 KKIALRE
Target Type Literature-reported Target
Gene Name CDKL1
Biochemical Class Kinase
UniProt ID
CDKL1_HUMAN
Drug Binding Sites of Target  Top
Ligand Name: N-(5-{[(2s)-4-Amino-2-(3-Chlorophenyl)butanoyl]amino}-1h-Indazol-3-Yl)benzamide Ligand Info
Structure Description CRYSTAL STRUCTURE OF THE HUMAN CDKL1 KINASE DOMAIN PDB:4AGU
Method X-ray diffraction Resolution 2.40 Å Mutation Yes [1]
PDB Sequence
EKYEKIGKIG
11
EGSYGVVFKC
21
RNRDTGQIVA
31
IKKFLESEDP
42
VIKKIALREI
52

RMLKQLKHPN
62
LVNLLEVFRR
72
KRRLHLVFEY
82
CDHTVLHELD
92
RYQRGVPEHL
102

VKSITWQTLQ
112
AVNFCHKHNC
122
IHRDVKPENI
132
LITKHSVIKL
142
CDFGFARLLT
164

RWYRSPELLV
174
GDTQYGPPVD
184
VWAIGCVFAE
194
LLSGVPLWPG
204
KSDVDQLYLI
214

RKTLGDLIPR
224
HQQVFSTNQY
234
FSGVKIPDPE
244
DMEPLELKFP
254
NISYPALGLL
264

KGCLHMDPTE
274
RLTCEQLLHH
284
PYFENIR
Residue
Distance (Å)
ILE10
3.522
GLY11
3.438
GLU12
3.720
GLY13
3.191
TYR15
3.937
GLY16
3.499
VAL17
4.135
VAL18
3.666
ALA31
3.399
LYS33
3.879
VAL64
4.015
PHE80
3.709
GLU81
2.796
Residue
Distance (Å)
TYR82
3.377
CYS83
2.955
ASP84
3.137
HIS85
4.298
THR86
3.890
HIS89
3.257
ASP126
4.367
LYS128
4.354
GLU130
3.853
ASN131
2.729
LEU133
3.518
CYS143
4.070
ASP144
3.344
References  Top
REF 1 CDKL Family Kinases Have Evolved Distinct Structural Features and Ciliary Function. Cell Rep. 2018 Jan 23;22(4):885-894.

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